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You are here: Home / Recipes / Main Dish / Mexican/Southwest / Quinoa Enchilada Bake with Black Beans

Quinoa Enchilada Bake with Black Beans

By Traci · Jump to Recipe ·
This post may contain affiliate links. Please read my affiliate policy.

Chock full of veggies, black beans, cheese and homemade enchilada sauce, Quinoa Enchilada Bake is a fabulous vegetarian casserole to feed a small crowd. This Mexican quinoa recipe is freezer friendly and makes for easy leftovers. This recipe is vegetarian and gluten free.

Overhead shot of Quinoa Enchilada Bake with Black Beans ready for sharing.

Seasonal Ingredients

Late summer and early fall veggies continue to make a showing at the farms and farmers markets, so I’m keeping them on the menu as long as I can.  Just picked sweet corn from Bell’s Farm is hard to resist right off the cob, but I also love putting it in all things Mexican food. It also makes a great opportunity to whip up a black bean recipe! 

Shucking sweet corn is a practice in patience. Removing the silk takes a bit of effort, but worth the pot of gold in the end. But, frozen corn can be easily subbed for fresh! 

This vegetarian, gluten free, quinoa enchilada casserole recipe has all the late summer suspects. Fresh corn, zucchini, poblano or green bell pepper, and onions make a showing as well as hearty and texture rich quinoa, black beans and my made-in-a-blender easy homemade enchilada sauce. Best of all, this Quinoa Enchilada Bake gluten free casserole is freezer friendly. 

Fresh corn on a cutting board with cilantro and lime.     Dicing fresh zucchini on a cutting board. Cooked quinoa in a bowl.     Sautéing bell pepper and onion in a pan. Mixing all the ingredients for an enchilada bake in a bowl.     Add the cheese and enchilada sauce to the bowl of ingredients and mix.

Quick Guide: How to Make Mexican Quinoa Enchilada Bake

Mexican quinoa enchilada bake is super simple to pull together. In summary, here’s how to make this healthy Mexican quinoa casserole (see recipe card for details):

  • First, cook the quinoa.
  • Meanwhile, saute onions, and poblano adding in cumin towards the end of cooking.
  • Next, place the cooked veggies and quinoa in a large mixing bowl along with the raw zucchini, corn, enchilada sauce and cheese.
  • Last, throughly mix, then transfer to a baking dish and bake for about 35 minutes. 

While this Mexican quinoa casserole is baking, it’s a perfect time to tidy the kitchen and whip up a batch of guacamole. Oh and margaritas if you’re so inclined. 

Overhead shot of Quinoa Enchilada Bake with Black Beans.Close up of Quinoa Enchilada Casserole with a spoon ready to be shared.

RELATED: Cook black beans from scratch! See my easy how to, three ways on my How to Cook Black Beans From Scratch recipe.

A Few Recipe Notes

  • Use fresh or frozen corn niblets in this quinoa enchilada bake. No need to thaw.
  • Meal prep ready! Cook the quinoa and chop the veggies ahead of when you need, then assemble the day of baking. 
  • Freezer friendly? Yes please! Simply store in a covered container for up to a month. Thaw in the refrigerator overnight and rewarm in a 350F oven for about 15 minutes. 
  • I use Homemade Enchilada Sauce (gluten free or not) for this quinoa enchilada bake. I hope you’ll give it go… it’s made in a blender so it’s super easy. 
  • Whip up a batch of Charred Jalapeño-Lime Guacamole while this vegetarian casserole bakes then share with your favorite Mexican food toppings. A batch of Mezcal Margarita Fizz would pair quite nicely with quinoa enchilada casserole. 

More Vegetarian Mexican Food Recipes to Love:

  • Roasted Cauliflower Tinga Tacos
  • Skillet Black Bean Vegetarian Enchiladas Verde
  • One Pan Mexican Quinoa Recipe – from Foolproof Living
  • Sweet Potato Wrapped Black Bean Enchiladas
  • Creamy Corn, Zucchini and Poblano Tacos
Overhead shot of Quinoa Enchilada Bake with Black Beans ready for sharing.
Print Recipe

Quinoa Enchilada Bake with Black Beans

Prep Time:20 minutes
Cook Time:35 minutes
Total Time:55 minutes
Servings:8 Servings
Calories:352kcal
Author:Traci York | Vanilla And Bean
Chock full of veggies, black beans, cheese and homemade enchilada sauce, Quinoa Enchilada Bake with Black Beans is a fabulous casserole to feed a small crowd. It's freezer friendly and makes for easy leftovers. vegetarian + gluten free

Ingredients

  • 1 C (190g) Quinoa rinsed and drained, I like tricolor quinoa
  • 1 1/2 C (354g) Water
  • 1 Tbs Coconut or Olive Oil
  • 1 C (150g) White or Purple Onion medium dice, about one medium
  • 1 1/3 C (160g) Green Bell or Poblano Pepper medium dice, about one medium
  • 2 tsp Fine Sea Salt
  • 2 tsp Cumin ground
  • 3 C (345g) Zucchini diced small, about one medium
  • 1 1/2 C (210g) Corn Niblets fresh or frozen, about 1 ear of corn
  • 15 oz (425g) Black Beans rinsed and drained, one can
  • 2 C (500g) Homemade Enchilada Sauce
  • 2 Tbs Adobo Sauce
  • 2 C (200g) Pepper Jack or Monterey Jack Cheese

For Garnish (optional):

  • Avocado, cilantro, salsa, sliced jalapeños, black olives, sour cream

Instructions

  • Soak the quinoa over night covering it in at least 2" of water (if desired). Otherwise, simply rinse the quinoa through a fine mesh strainer until the water runs clear.
    In a medium sauce pot add the soaked (or unsoaked) quinoa and water. Stir in a pinch of salt and bring to a simmer. Cover, turn heat to medium-low, and simmer until tender and the 'tails' are showing. Soaked quinoa will take about 8 minutes and need to be drained while unsoaked quinoa takes about 15 minutes to cook (no draining needed). Drain any excess water and spoon into a large mixing bowl. 
  • Set oven rack in center and preheat oven to 350F (180C).
    Meanwhile heat the oil in a medium saute pan until it shimmers. Add the onion and bell (or poblano) pepper and saute allowing the veggies to set for 2-3 minutes at a time to sear, for about 8 minutes or until vegetables are tender. Sprinkle in the salt and cumin and stir so that the veggies are coated for one minute. Add the mixture to the bowl of quinoa. 
  • To the mixing bowl, add the zucchini, corn, black beans, enchilada sauce, adobo sauce and 1 1/2 C (150g) of pepper jack cheese. Stir thoroughly so that all the veggies are evenly distributed. Transfer the mixture into a 9"x13" (22cmx33cm) baker/casserole, smooth top and sprinkle the remaining cheese over the top. Cover with foil tenting the center slightly so that it doesn't rest on the cheese and bake for 30-35 minutes until the cheese has melted and it's bubbly. Remove from oven and rest covered for 10 minutes. Garnish with options or serve garnishes on the side.
  • Store in a covered container in the refrigerator for up to three days or in the freezer for up to one month. Thaw overnight in the refrigerator. To reheat, cover and bake in a preheated oven for about 15 minutes. 

Notes

Recipe Inspired by PCC Market. 

Nutrition is provided as a courtesy and is an estimate. If this information is important to you, please have it verified independently.

Calories: 352kcal | Carbohydrates: 42g | Protein: 18g | Fat: 13g | Saturated Fat: 7g | Cholesterol: 25mg | Sodium: 2092mg | Potassium: 585mg | Fiber: 9g | Sugar: 8g | Vitamin A: 830IU | Vitamin C: 31.8mg | Calcium: 261mg | Iron: 3.6mg
Made It? Leave a comment below! The most helpful comment may include recipe rating, feedback, any modifications and/or helping other commenters. On Instagram? Take a snap of your make and share, tagging @VanillaAndBean #VanillaAndBean!
Pinterest pin for quinoa enchilada bake with black beans.

You might also like:

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Roasted Stuffed Poblanos with Smoky Quinoa, Sweet Potatoes and Black Beans

Overhead shot of Creamy Corn, Zucchini and Poblano Tacos on a plate served with chips and guacamole.

Creamy Corn, Zucchini and Poblano Tacos

A spoon digging into Skillet Black Bean Vegetarian Enchiladas Verde.

Skillet Black Bean Vegetarian Enchiladas Verde

Sweet Potato Wrapped Black Bean Enchaladas are on the table and ready for sharing!

Sweet Potato Wrapped Black Bean Enchiladas

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  1. Avatar for VictoriaVictoria

    June 11, 2020 at 5:29 am

    5 stars
    This was delicious! Another great V & B recipe to add to our meal rotation. I cooked the black beans the day before in my slow cooker per your instructions “How to cook black beans” (My go-to method now) then searched your site for a recipe to use them and chose this one. As there are only 2 of us at home, I divided the mixture into two 9×9 pans before baking so I could freeze one for another day. Served with chips, salsa, guacamole and margaritas. So good! Thanks Traci.

    Reply
    • Avatar for TraciTraci

      June 11, 2020 at 7:59 am

      Hi Victoria! Thank you for coming back and leaving a note! So happy to hear you enjoyed the bake. Hooray for having another in the freezer! Love those sides and margaritas.

      Reply
  2. Avatar for SueSue

    March 30, 2020 at 6:38 pm

    Imagine my surprise when I was ready to assemble the enchiladas and realized this wasn’t an enchilada recipe at all – but instead a Mexican inspired veggie casserole. My bad for quickly reading the ingredient list, high fiving that I had everything on hand, and jumping in to get dinner on the table. Needless to say, I modified by adding a generous scoop of the filling down the middle of fresh tortillas and baked them as, well, enchiladas. We liked the flavors but without the tortillas I would have been challenged to call this a main course.

    Reply
    • Avatar for TraciTraci

      March 31, 2020 at 5:04 pm

      Stuffed in enchiladas sounds lovely! Thank you for your tip, but I’m sorry for your disappointment. We love this as a main!

      Reply
  3. Avatar for SusanSusan

    March 3, 2019 at 6:27 pm

    5 stars
    I made this tonight and loved it. I’ve made a few of your recipes and I will definitely be adding this to my repertoire..

    Reply
    • Avatar for TraciTraci

      March 3, 2019 at 7:19 pm

      Hiii Susan! Thank you so much for coming back and leaving a note and your kind words! Sooo happy to hear!

      Reply
  4. Avatar for Diana NelsonDiana Nelson

    January 6, 2019 at 2:33 pm

    Added diced carrots and mushrooms and a few less zucchini. Tried the homemade enchilada sauce (loved the flavor), as well. I had a hard time not eating the quinoa/vege mix before it went in the oven! Will definitely share this recipe. It was delicious!

    Reply
    • Avatar for TraciTraci

      January 6, 2019 at 3:39 pm

      Hi Diana! Thank you for coming back and leaving a note! The sauce, right? I’ve been double batching it for the freezer. I love how you added some winter veggies (what a great idea!) :D Thank you for sharing! Day made!

      Reply
  5. Avatar for Laura | Tutti DolciLaura | Tutti Dolci

    October 1, 2018 at 5:01 pm

    This bake looks so wonderful! I love all the veggies you incorporated.

    Reply
  6. Avatar for Sarah | Well and FullSarah | Well and Full

    September 25, 2018 at 12:54 pm

    This casserole looks absolutely packed with flavor!! Amazing as always, Traci!

    Reply
    • Avatar for TraciTraci

      October 10, 2018 at 11:47 am

      Thank youuu Sarah!

      Reply
  7. Avatar for Sarah @ Making Thyme for HealthSarah @ Making Thyme for Health

    September 25, 2018 at 9:38 am

    I agree 100%! Fresh corn is what life is all about. You have got me craving it so bad in this enchilada bake!! Such a brilliant idea for an easy and healthy dinner. Definitely putting this on the list to try soon!

    Reply
    • Avatar for TraciTraci

      October 10, 2018 at 11:44 am

      I sooo wish corn had a longer season… I blink and it’s gone! Woot woot! I hope you two enjoy the recipe Sarah!

      Reply
  8. Avatar for Geraldine | Green Valley KitchenGeraldine | Green Valley Kitchen

    September 23, 2018 at 12:01 pm

    5 stars
    This is my kind of recipe, Traci. Full of veggies and quinoa and great spices. The black beans give it the protein boost that it needs. I love dishes like this – make a big batch and have it on hand for lunches and dinner. Looking forward to trying this one. So easy and so good!

    Reply
    • Avatar for TraciTraci

      September 24, 2018 at 1:48 pm

      It is super hearty and I love heating up the leftovers. Rob loves it for lunch at work. I imagine you’ve lots of tomatoes to top this casserole with too! I hope you enjoy it Geraldine and with that homemade sauce!

      Reply
  9. Avatar for Aysegul SanfordAysegul Sanford

    September 20, 2018 at 4:28 pm

    5 stars
    Ahhh this is sooo my kind of dinner Traci. Layers and layers of veggie and quinoa goodness.

    Though I have to agree, shucking corn requires a lot of patience. Needless to say, not my favorite thing.

    Gorgeous as always!

    Reply
    • Avatar for TraciTraci

      September 24, 2018 at 1:47 pm

      Thaank you Ayse! Layers FTW! I hear you on the corn… but when it’s local and in season, I do a lot of shucking!

      Reply
  10. Avatar for annie@ciaochowbambina[email protected]

    September 17, 2018 at 7:16 am

    5 stars
    I have one word: Irresistible!!

    Reply
    • Avatar for TraciTraci

      September 24, 2018 at 1:46 pm

      Thank you, Annie! xo

      Reply
  11. Avatar for Mary Ann | The Beach House KitchenMary Ann | The Beach House Kitchen

    September 16, 2018 at 6:17 am

    5 stars
    Love this recipe Traci. I’d need to double up on the corn and black beans and omit the zucchini for Tom, but otherwise I know he’d love it. Zucchini is one of my favorites and I’ve been enjoying them from my brother in law’s garden all summer long. I may need to make two separate casseroles. One for Tom and one for me!

    Reply
    • Avatar for TraciTraci

      September 24, 2018 at 1:46 pm

      Doubling up is a great idea for those that don’t care for zucchini. You know, Rob is not a fan of zucchini either unless I hide it in Mexican food. He instantly loves it! lol! Two casseroles sounds like a plan!

      Reply
  12. Avatar for 2pots2cook2pots2cook

    September 15, 2018 at 8:33 am

    5 stars
    Perfectly light and tasteful …

    Reply
    • Avatar for TraciTraci

      September 24, 2018 at 1:45 pm

      Thaank you!!

      Reply
  13. Avatar for Kelly MulcairKelly Mulcair

    September 14, 2018 at 7:32 am

    So good! All the comforts and I appreciate the seasonality of your beautiful dish too. I make a similar Mexican inspired quinoa skillet but could take a cue from your homemade enchilada sauce – will give it a try. I love the versatility and texture of tapioca (will investigate masa harina have not tried) Thanks Traci! beautiful work.

    Reply
    • Avatar for TraciTraci

      September 24, 2018 at 1:45 pm

      Hiiii Kelly! Thank you so much! I hope you’ll give that sauce a try. It is truly special and oh so simple to whip up!

      Reply

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